PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04124.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 168aa    MW: 19404.7 Da    PI: 7.1287
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04124.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.72.4e-1386144563
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                              +++rr+ +NRe+ArrsR RK+  ++eL   v  L +eN  L+++l++ +++ +++ +e+
  Rsa1.0_04124.1_g00004.1  86 RKQRRMLSNRESARRSRMRKQRHLDELWSQVIRLRSENNCLIDKLNRVSETQDSVLKEN 144
                              79************************************************999888775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-1482146IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.81884147IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.63E-1286135No hitNo description
Gene3DG3DSA:1.20.5.1702.4E-1086136No hitNo description
PfamPF001705.3E-1186144IPR004827Basic-leucine zipper domain
CDDcd147023.61E-1787135No hitNo description
PROSITE patternPS00036089104IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MIPAGITAYC QYLSPENLAT LPVEFNMINM PSSPTSSSSL TYLNDLINNN FSSSSNGQDL  60
MMSNNSTSDE DHQHHHHQSI IVLDERKQRR MLSNRESARR SRMRKQRHLD ELWSQVIRLR  120
SENNCLIDKL NRVSETQDSV LKENSKLKEE ASELRQLVCE LKSNKNND
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198105RRSRMRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935451e-112AB493545.1 Arabidopsis thaliana At2g04038 gene for hypothetical protein, partial cds, clone: RAAt2g04038.
GenBankAC0071781e-112AC007178.6 Arabidopsis thaliana chromosome 2 clone F3L12 map mi320, complete sequence.
GenBankCP0026851e-112CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613647.11e-107PREDICTED: basic leucine zipper 43
SwissprotQ9FMC24e-32BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A0D3AVT91e-107A0A0D3AVT9_BRAOL; Uncharacterized protein
STRINGBra017359.1-P3e-83(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28922469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04038.14e-64basic leucine-zipper 48